Шахнович Евгений Исаакович

к.ф.-м.н., полный профессор Гарвардского университета, США

Список статей

    1. Raoof, S; Heo, M; Shakhnovich, EI A one-shot germinal center model under protein structural stability constraints//PHYSICAL BIOLOGY. 2013. Vol. 10. Iss.2.  pp.-25001. WOS:000317103500002
    2. Krobath, H; Shakhnovich, EI; Faisca, PFN Structural and energetic determinants of co-translational folding//JOURNAL OF CHEMICAL PHYSICS. 2013. Vol. 138. Iss.21.  pp.-215101. WOS:000320138900048
    3. Bershtein, S; Mu, WM; Serohijos, AWR; Zhou, JW; Shakhnovich, EI Protein Quality Control Acts on Folding Intermediates to Shape the Effects of Mutations on Organismal Fitness//MOLECULAR CELL. 2013. Vol. 49. Iss.1.  pp.133-144. WOS:000313607300013
    4. Tricard, S; Stan, CA; Shakhnovich, EI; Whitesides, GM A macroscopic device described by a Boltzmann-like distribution//SOFT MATTER. 2013. Vol. 9. Iss.17.  pp.4480-4488. WOS:000316967300013
    5. Dasmeh, P; Serohijos, AWR; Kepp, KP; Shakhnovich, EI Positively Selected Sites in Cetacean Myoglobins Contribute to Protein Stability//PLOS COMPUTATIONAL BIOLOGY. 2013. Vol. 9. Iss.3.  e1002929. WOS:000316864200006
    6. Serohijos, AWR; Lee, SYR; Shakhnovich, EI Highly Abundant Proteins Favor More Stable 3D Structures in Yeast//BIOPHYSICAL JOURNAL. 2013. Vol. 104. Iss.3.  pp.L1-L3. WOS:000314619900001
    7. Bershtein, S; Wu, WM; Shakhnovich, EI Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations (vol 109, pg 4857, 2012)//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012. Vol. 109. Iss.18.  pp.7126-7126. WOS:000303602100074
    8. Shakhnovich, E; Kutchukian, P FOG: A knowledge-based algorithm to generate optimized libraries of compounds for drug discovery//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 11th International Biorelated Polymer Symposium / 243rd National Spring Meeting of the American-Chemical-Society (ACS). 2012. Vol. 243. Iss..  pp.-. WOS:000324475104413
    9. Bershtein, S; Mu, WM; Shakhnovich, EI Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012. Vol. 109. Iss.13.  pp.4857-4862. WOS:000302164200035
    10. Xia, Z; Das, P; Shakhnovich, EI; Zhou, RH Collapse of Unfolded Proteins in a Mixture of Denaturants//JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2012. Vol. 134. Iss.44.  pp.18266-18274. WOS:000310720900028
    11. Estacio, SG; Fernandes, CS; Krobath, H; Faisca, PFN; Shakhnovich, EI Robustness of atomistic Go models in predicting native-like folding intermediates//JOURNAL OF CHEMICAL PHYSICS. 2012. Vol. 137. Iss.8.  pp.-85102. WOS:000308416800057
    12. Huang, L; Shakhnovich, EI Is there an en route folding intermediate for cold shock proteins?//PROTEIN SCIENCE. 2012. Vol. 21. Iss.5.  pp.677-685. WOS:000302620600008
    13. Liberles, DA; Teichmann, SA; Bahar, I; Bastolla, U; Bloom, J; Bornberg-Bauer, E; Colwell, LJ; de Koning, APJ; Dokholyan, NV; Echave, J; Elofsson, A; Gerloff, DL; Goldstein, RA; Grahnen, JA; Holder, MT; Lakner, C; Lartillot, N; Lovell, SC; Naylor, G; Perica, T; Pollock, DD; Pupko, T; Regan, L; Roger, A; Rubinstein, N; Shakhnovich, E; Sjolander, K; Sunyaev, S; Teufel, AI; Thorne, JL; Thornton, JW; Weinreich, DM; Whelan, S The interface of protein structure, protein biophysics, and molecular evolution//PROTEIN SCIENCE. 2012. Vol. 21. Iss.6.  pp.769-785. WOS:000304150600001
    14. Serohijos, AWR; Rimas, Z; Shakhnovich, EI Protein Biophysics Explains Why Highly Abundant Proteins Evolve Slowly//CELL REPORTS. 2012. Vol. 2. Iss.2.  pp.249-256. WOS:000309715100006
    15. Mannige, RV; Brooks, CL; Shakhnovich, EI A Universal Trend among Proteomes Indicates an Oily Last Common Ancestor//PLOS COMPUTATIONAL BIOLOGY. 2012. Vol. 8. Iss.12.  e1002839. WOS:000312901500041
    16. Wylie, CS; Shakhnovich, EI Mutation Induced Extinction in Finite Populations: Lethal Mutagenesis and Lethal Isolation//PLOS COMPUTATIONAL BIOLOGY. 2012. Vol. 8. Iss.8.  e1002609. WOS:000308553500005
    17. Bershtein, S; Mu, WM; Shakhnovich, E Protein homeostasis sculpts fitness landscape of E. coli//PROTEIN SCIENCE. 26th Annual Symposium of the Protein-Society. 2012. Vol. 21. Iss.. SU. 1. pp.173-173. WOS:000307019800304
    18. Bershtein, S; Mu, WM; Shakhnovich, E Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations//PROTEIN SCIENCE. 26th Annual Symposium of the Protein-Society. 2012. Vol. 21. Iss.. SU. 1. pp.185-185. WOS:000307019800331
    19. Bershtein, S; Mu, WM; Shakhnovich, E Regulation of expression of the aggregation-prone proteins has a long-lasting effect on E.coli's fitness landscape//PROTEIN SCIENCE. 26th Annual Symposium of the Protein-Society. 2012. Vol. 21. Iss.. SU. 1. pp.192-192. WOS:000307019800346
    20. Krobath, H; Estacio, SG; Faisca, PFN; Shakhnovich, EI Identification of a Conserved Aggregation-Prone Intermediate State in the Folding Pathways of Spc-SH3 Amyloidogenic Variants//JOURNAL OF MOLECULAR BIOLOGY. 2012. Vol. 422. Iss.5.  pp.705-722. WOS:000309039800010
    21. Shakhnovich, E PROTEIN FOLDING To knot or not to knot?//NATURE MATERIALS. 2011. Vol. 10. Iss.2.  pp.84-86. WOS:000286512200009
    22. Heo, MY; Maslov, S; Shakhnovich, E Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2011. Vol. 108. Iss.10.  pp.4258-4263. WOS:000288120400081
    23. Wylie, CS; Shakhnovich, EI A biophysical protein folding model accounts for most mutational fitness effects in viruses//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2011. Vol. 108. Iss.24.  pp.9916-9921. WOS:000291594000039
    24. Lukatsky, DB; Afek, A; Shakhnovich, EI Sequence correlations shape protein promiscuity//JOURNAL OF CHEMICAL PHYSICS. 2011. Vol. 135. Iss.6.  pp.-65104. WOS:000293955000037
    25. Heo, M; Zeldovich, KB; Shakhnovich, EI Diversity Against Adversity: How Adaptive Immune System Evolves Potent Antibodies//JOURNAL OF STATISTICAL PHYSICS. 2011. Vol. 144. Iss.2.  pp.241-267. WOS:000293301000003
    26. Afek, A; Shakhnovich, EI; Lukatsky, DB Multi-Scale Sequence Correlations Increase Proteome Structural Disorder and Promiscuity//JOURNAL OF MOLECULAR BIOLOGY. 2011. Vol. 409. Iss.3.  pp.439-449. WOS:000291371200012
    27. Nivon, LG; Shakhnovich, EI Thermodynamics and Kinetics of the Hairpin Ribozyme from Atomistic Folding/Unfolding Simulations//JOURNAL OF MOLECULAR BIOLOGY. 2011. Vol. 411. Iss.5.  pp.1128-1144. WOS:000294516700017
    28. Mabanglo, MF; Serohijos, AWR; Shakhnovich, EL; Poulter, CD Fosfomycin is an ambiguous substrate and a competitive inhibitor of isopentenyl phosphate kinase//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 241st National Meeting and Exposition of the American-Chemical-Society (ACS). 2011. Vol. 241. Iss..  pp.-. WOS:000291982801580
    29. Xu, JB; Huang, L; Shakhnovich, EI The ensemble folding kinetics of the FBP28 WW domain revealed by an all-atom Monte Carlo simulation in a knowledge-based potential//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2011. Vol. 79. Iss.6.  pp.1704-1714. WOS:000290485500002
    30. Faisca, PFN; Nunes, A; Travasso, RDM; Shakhnovich, EI Non-native interactions play an effective role in protein folding dynamics//PROTEIN SCIENCE. 2010. Vol. 19. Iss.11.  pp.2196-2209. WOS:000283759000016
    31. Choi, PJ; Xie, XS; Shakhnovich, EI Stochastic Switching in Gene Networks Can Occur by a Single-Molecule Event or Many Molecular Steps//JOURNAL OF MOLECULAR BIOLOGY. 2010. Vol. 396. Iss.1.  pp.230-244. WOS:000274766500019
    32. Kutchukian, PS; Shakhnovich, EI De novo design: balancing novelty and confined chemical space//EXPERT OPINION ON DRUG DISCOVERY. 2010. Vol. 5. Iss.8.  pp.789-812. WOS:000280764500007
    33. Heo, M; Shakhnovich, EI Interplay between Pleiotropy and Secondary Selection Determines Rise and Fall of Mutators in Stress Response//PLOS COMPUTATIONAL BIOLOGY. 2010. Vol. 6. Iss.3.  e1000710. WOS:000278125200018
    34. Zhang, JS; Shakhnovich, EI Optimality of Mutation and Selection in Germinal Centers//PLOS COMPUTATIONAL BIOLOGY. 2010. Vol. 6. Iss.6.  e1000800. WOS:000279341000006
    35. Chen, PQ; Shakhnovich, EI Thermal Adaptation of Viruses and Bacteria//BIOPHYSICAL JOURNAL. 2010. Vol. 98. Iss.7.  pp.1109-1118. WOS:000276582700003
    36. Zhang, JS; Shakhnovich, EI Slowly Replicating Lytic Viruses: Pseudolysogenic Persistence and Within-Host Competition//PHYSICAL REVIEW LETTERS. 2009. Vol. 102. Iss.17.  pp.-178103. WOS:000265948300075
    37. Kosmrlj, A; Chakraborty, AK; Kardar, M; Shakhnovich, EI Thymic Selection of T-Cell Receptors as an Extreme Value Problem//PHYSICAL REVIEW LETTERS. 2009. Vol. 103. Iss.6.  pp.-68103. WOS:000268809300075
    38. Shakhnovich, E Protein folding roller coaster, one molecule at a time//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009. Vol. 106. Iss.29.  pp.11823-11824. WOS:000268178400003
    39. Heo, M; Kang, L; Shakhnovich, EI Emergence of species in evolutionary "simulated annealing''//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009. Vol. 106. Iss.6.  pp.1869-1874. WOS:000263252500037
    40. Kutchukian, PS; Yang, JS; Verdine, GL; Shakhnovich, EI All-Atom Model for Stabilization of alpha-Helical Structure in Peptides by Hydrocarbon Staples//JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2009. Vol. 131. Iss.13.  pp.4622-4627. WOS:000264806300033
    41. Lee, JW; Zemojtel, T; Shakhnovich, E Systems-Level Evidence of Transcriptional Co-Regulation of Yeast Protein Complexes//JOURNAL OF COMPUTATIONAL BIOLOGY. 2009. Vol. 16. Iss.2.  pp.331-339. WOS:000263057400017
    42. Chen, PQ; Shakhnovich, EI Lethal Mutagenesis in Viruses and Bacteria//GENETICS. 2009. Vol. 183. Iss.2.  pp.639-650. WOS:000271558300019
    43. Kutchukian, PS; Lou, D; Shakhnovich, EI FOG: Fragment Optimized Growth algorithm for the de novo generation of molecules occupying drug-like chemical space//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2009. Vol. 238. Iss..  pp.-. WOS:000207861904227
    44. Donald, JE; Shakhnovich, EI SDR: a database of predicted specificity-determining residues in proteins//NUCLEIC ACIDS RESEARCH. 2009. Vol. 37. Iss..  pp.D191-D194. WOS:000261906200035
    45. Kutchukian, PS; Lou, D; Shakhnovich, EI FOG: Fragment Optimized Growth Algorithm for the de Novo Generation of Molecules occupying Druglike Chemical Space//JOURNAL OF CHEMICAL INFORMATION AND MODELING. 2009. Vol. 49. Iss.7.  pp.1630-1642. WOS:000268138900002
    46. Roland, CB; Hatch, KA; Prentiss, M; Shakhnovich, EI DNA unzipping phase diagram calculated via replica theory//PHYSICAL REVIEW E. 2009. Vol. 79. Iss.5.  pp.-51923. WOS:000266500700101
    47. Yang, JS; Wallin, S; Shakhnovich, EI Universality and diversity of folding mechanics for three-helix bundle proteins//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008. Vol. 105. Iss.3.  pp.895-900. WOS:000252647900014
    48. Faisca, PFN; Travasso, RDM; Ball, RC; Shakhnovich, EI Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis//JOURNAL OF CHEMICAL PHYSICS. 2008. Vol. 129. Iss.9.  pp.-95108. WOS:000258976000040
    49. Shakhnovich, BE; Shakhnovich, EI Improvisation in evolution of genes and genomes: whose structure is it anyway?//CURRENT OPINION IN STRUCTURAL BIOLOGY. 2008. Vol. 18. Iss.3.  pp.375-381. WOS:000257539100014
    50. Wallin, S; Shakhnovich, EI Understanding ensemble protein folding at atomic detail//JOURNAL OF PHYSICS-CONDENSED MATTER. 2008. Vol. 20. Iss.28.  pp.-283101. WOS:000257178500001
    51. Zhang, JS; Maslov, S; Shakhnovich, EI Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size//MOLECULAR SYSTEMS BIOLOGY. 2008. Vol. 4. Iss..  pp.-210. WOS:000258935100001
    52. Zhang, JS; Shakhnovich, EI Sensitivity-dependent model of protein-protein interaction networks//PHYSICAL BIOLOGY. 2008. Vol. 5. Iss.3.  pp.-36011. WOS:000259700300011
    53. Zeldovich, KB; Shakhnovich, EI Understanding protein evolution: From protein physics to Darwinian selection//ANNUAL REVIEW OF PHYSICAL CHEMISTRY. 2008. Vol. 59. Iss..  pp.105-127. WOS:000255723500005
    54. de Araujo, AFP; Gomes, ALC; Bursztyn, AA; Shakhnovich, EI Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2008. Vol. 70. Iss.3.  pp.971-983. WOS:000252836300032
    55. Lukatsky, DB; Shakhnovich, EI Statistically enhanced promiscuity of structurally correlated patterns//PHYSICAL REVIEW E. 2008. Vol. 77. Iss.2.  pp.-20901. WOS:000253763700014
    56. Perlstein, EO; Deeds, EJ; Ashenberg, O; Shakhnovich, EI; Schreiber, SL Quantifying fitness distributions and phenotypic relationships in recombinant yeast populations//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007. Vol. 104. Iss.25.  pp.10553-10558. WOS:000247500000046
    57. Deeds, EJ; Ashenberg, O; Gerardin, J; Shakhnovich, EI Robust protein-protein interactions in crowded cellular environments//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007. Vol. 104. Iss.38.  pp.14952-14957. WOS:000249715100016
    58. Zeldovich, KB; Chen, PQ; Shakhnovich, EI Protein stability imposes limits on organism complexity and speed of molecular evolution//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007. Vol. 104. Iss.41.  pp.16152-16157. WOS:000250128800034
    59. Yang, JS; Chen, WW; Skolnick, J; Shakhnovich, EI All-atom ab initio folding of a diverse set of proteins//STRUCTURE. 2007. Vol. 15. Iss.1.  pp.53-63. WOS:000245148200008
    60. Zeldovich, K; Shakhnovich, B; Shakhnovich, EI How protein physics shapes biological evolution//JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2007. Vol. 24. Iss.6.  pp.751-751. WOS:000247289600211
    61. Zeldovich, KB; Berezovsky, IN; Shakhnovich, EI Protein and DNA sequence determinants of thermophilic adaptation//PLOS COMPUTATIONAL BIOLOGY. 2007. Vol. 3. Iss.1.  pp.62-72e5. WOS:000243838700007
    62. Berezovsky, IN; Zeldovich, KB; Shakhnovich, EI Positive and negative design in stability and thermal adaptation of natural proteins//PLOS COMPUTATIONAL BIOLOGY. 2007. Vol. 3. Iss.3.  pp.498-507e52. WOS:000246191000016
    63. Donald, JE; Chen, WW; Shakhnovich, EI Energetics of protein-DNA interactions//NUCLEIC ACIDS RESEARCH. 2007. Vol. 35. Iss.4.  pp.1039-1047. WOS:000245353300009
    64. Lukatsky, DB; Shakhnovich, BE; Mintseris, J; Shakhnovich, EI Structural similarity enhances interaction propensity of proteins//JOURNAL OF MOLECULAR BIOLOGY. 2007. Vol. 365. Iss.5.  pp.1596-1606. WOS:000243749600029
    65. Wallin, S; Zeldovich, KB; Shakhnovich, EI The folding mechanics of a knotted protein//JOURNAL OF MOLECULAR BIOLOGY. 2007. Vol. 368. Iss.3.  pp.884-893. WOS:000246060200023
    66. Zeldovich, KB; Chen, PQ; Shakhnovich, BE; Shakhnovich, EI A first-principles model of early evolution: Emergence of gene families, species, and preferred protein folds//PLOS COMPUTATIONAL BIOLOGY. 2007. Vol. 3. Iss.7.  pp.1224-1238e139. WOS:000249106000007
    67. Gomes, ALC; de Rezende, JR; de Araujo, AFP; Shakhnovich, EI Description of atomic burials in compact globular proteins by fermi-dirac probability distributions//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2007. Vol. 66. Iss.2.  pp.304-320. WOS:000243358000005
    68. Chen, WW; Yang, JS; Shakhnovich, EI A knowledge-based move set for protein folding//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2007. Vol. 66. Iss.3.  pp.682-688. WOS:000243487700017
    69. Kleiner, A; Shakhnovich, E The mechanical unfolding of ubiquitin through all-atom Monte Carlo simulation with a go-type potential//BIOPHYSICAL JOURNAL. 2007. Vol. 92. Iss.6.  pp.2054-2061. WOS:000244558200022
    70. Nivon, LG; Shakhnovich, EI Kinetic folding pathway of the hairpin ribozyme from all-atom simulation: Salt-dependence and transition state ensemble//BIOPHYSICAL JOURNAL. 51st Annual Meeting of the Biophysical-Society. 2007. Vol. Iss.. SU. S. pp.351A-351A. WOS:000243972402191
    71. Lindberg, MO; Haglund, E; Hubner, IA; Shakhnovich, EI; Oliveberg, M Identification of the minimal protein-folding nucleus through loop-entropy perturbations//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006. Vol. 103. Iss.11.  pp.4083-4088. WOS:000236429300029
    72. Deeds, EJ; Ashenberg, O; Shakhnovich, EI A simple physical model for scaling in protein-protein interaction networks//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006. Vol. 103. Iss.2.  pp.311-316. WOS:000234624100012
    73. Hubner, IA; Deeds, EJ; Shakhnovich, EI Understanding ensemble protein folding at atomic detail//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006. Vol. 103. Iss.47.  pp.17747-17752. WOS:000242464900032
    74. Oliveberg, M; Shakhnovich, EI Folding and binding - The conformational repertoire of proteins: folding, aggregation and structural recognition//CURRENT OPINION IN STRUCTURAL BIOLOGY. 2006. Vol. 16. Iss.1.  pp.68-70. WOS:000236099900010
    75. Shakhnovich, EI Physics and evolution of protein-protein interactions//FASEB JOURNAL. Experimental Biology 2006 Meeting. 2006. Vol. 20. Iss.5.  pp.A1473-A1473. WOS:000236326205497
    76. Brumer, Y; Michor, F; Shakhnovich, EI Genetic instability and the quasispecies model//JOURNAL OF THEORETICAL BIOLOGY. 2006. Vol. 241. Iss.2.  pp.216-222. WOS:000239691300005
    77. Tannenbaum, E; Sherley, JL; Shakhnovich, EI Semiconservative quasispecies equations for polysomic genomes: The haploid case//JOURNAL OF THEORETICAL BIOLOGY. 2006. Vol. 241. Iss.4.  pp.791-805. WOS:000239842600009
    78. Zeldovich, KB; Berezovsky, IN; Shakhnovich, EI Physical origins of protein superfamilies//JOURNAL OF MOLECULAR BIOLOGY. 2006. Vol. 357. Iss.4.  pp.1335-1343. WOS:000236439300023
    79. Hubner, IA; Lindberg, M; Haglund, E; Oliveberg, M; Shakhnovich, EI Common motifs and topological effects in the protein folding transition state//JOURNAL OF MOLECULAR BIOLOGY. 2006. Vol. 359. Iss.4.  pp.1075-1085. WOS:000238682800020
    80. von Grotthuss, M; Plewczynski, D; Ginalski, K; Rychlewski, L; Shakhnovich, EI PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics//BMC BIOINFORMATICS. 2006. Vol. 7. Iss..  pp.-53. WOS:000236182900001
    81. Lukatsky, DB; Zeldovich, KB; Shakhnovich, EI Statistically enhanced self-attraction of random patterns//PHYSICAL REVIEW LETTERS. 2006. Vol. 97. Iss.17.  pp.-178101. WOS:000241586800066
    82. Berezovsky, IN; Shakhnovich, EI Physics and evolution of thermophilic adaptation//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005. Vol. 102. Iss.36.  pp.12742-12747. WOS:000231716700020
    83. Hubner, IA; Deeds, EJ; Shakhnovich, EI High-resolution protein folding with a transferable potential//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005. Vol. 102. Iss.52.  pp.18914-18919. WOS:000234350000026
    84. Berezovsky, IN; Chen, WW; Choi, PJ; Shakhnovich, EI Entropic stabilization of proteins and its proteomic consequences//PLOS COMPUTATIONAL BIOLOGY. 2005. Vol. 1. Iss.4.  pp.322-332e47. WOS:000234712900008
    85. Chen, WW; Shakhnovich, EI Lessons from the design of a novel atomic potential for protein folding//PROTEIN SCIENCE. 2005. Vol. 14. Iss.7.  pp.1741-1752. WOS:000230253900005
    86. Deeds, EJ; Hennessey, H; Shakhnovich, EI Prokaryotic phylogenies inferred from protein structural domains//GENOME RESEARCH. 2005. Vol. 15. Iss.3.  pp.393-402. WOS:000227327800007
    87. Donald, JE; Hubner, IA; Rotemberg, VM; Shakhnovich, EI; Mirny, LA CoC: a database of universally conserved residues in protein folds//BIOINFORMATICS. 2005. Vol. 21. Iss.10.  pp.2539-2540. WOS:000229285600057
    88. Donald, JE; Shakhnovich, EI Determining functional specificity from protein sequences//BIOINFORMATICS. 2005. Vol. 21. Iss.11.  pp.2629-2635. WOS:000229441500009
    89. Tannenbaum, E; Shakhnovich, EI Semi conservative replication, genetic repair, and many-gened genomes: Extending the quasispecies paradigm to living systems//PHYSICS OF LIFE REVIEWS. 2005. Vol. 2. Iss.4.  pp.290-317. WOS:000248042000003
    90. Donald, JE; Shakhnovich, EI Predicting specificity-determining residues in two large eukaryotic transcription factor families//NUCLEIC ACIDS RESEARCH. 2005. Vol. 33. Iss.14.  pp.4455-4465. WOS:000231362600013
    91. Brumer, Y; Shakhnovich, EI Selective advantage for conservative viruses//PHYSICAL REVIEW E. 2005. Vol. 71. Iss.3.  pp.-31903. WOS:000228630000061
    92. Tannenbaum, E; Sherley, JL; Shakhnovich, EI Evolutionary dynamics of adult stem cells: Comparison of random and immortal-strand segregation mechanisms//PHYSICAL REVIEW E. 2005. Vol. 71. Iss.4.  pp.-41914. WOS:000228752400060
    93. Hubner, IA; Shakhnovich, EI Geometric and physical considerations for realistic protein models//PHYSICAL REVIEW E. 2005. Vol. 72. Iss.2.  pp.-22901. WOS:000231564000084
    94. Deeds, EJ; Shakhnovich, EI The emergence of scaling in sequence-based physical models of protein evolution//BIOPHYSICAL JOURNAL. 2005. Vol. 88. Iss.6.  pp.3905-3911. WOS:000229503000019
    95. Hubner, IA; Edmonds, KA; Shakhnovich, EI Nucleation and the transition state of the SH3 domain//JOURNAL OF MOLECULAR BIOLOGY. 2005. Vol. 349. Iss.2.  pp.424-434. WOS:000229391300015
    96. Ding, F; Guo, WH; Dokholyan, NV; Shakhnovich, EI; Shea, JE Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations//JOURNAL OF MOLECULAR BIOLOGY. 2005. Vol. 350. Iss.5.  pp.1035-1050. WOS:000230701300017
    97. Tiana, G; Shakhnovich, BE; Dokholyan, NV; Shakhnovich, EI Imprint of evolution on protein structures//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004. Vol. 101. Iss.9.  pp.2846-2851. WOS:000220065300038
    98. Tiana, G; Dokholyan, NV; Broglia, RA; Shakhnovich, EI The evolution dynamics of model proteins//JOURNAL OF CHEMICAL PHYSICS. 2004. Vol. 121. Iss.5.  pp.2381-2389. WOS:000222680900041
    99. Liu, ZJ; Dominy, BN; Shakhnovich, EI Structural mining: Self-consistent design on flexible protein-peptide docking and transferable binding affinity potential//JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2004. Vol. 126. Iss.27.  pp.8515-8528. WOS:000222612600038
    100. Deeds, EJ; Shakhnovich, B; Shakhnovich, EI Proteomic traces of speciation//JOURNAL OF MOLECULAR BIOLOGY. 2004. Vol. 336. Iss.3.  pp.695-706. WOS:000188948500010
    101. Hubner, IA; Shimada, J; Shakhnovich, EI Commitment and nucleation in the protein G transition state//JOURNAL OF MOLECULAR BIOLOGY. 2004. Vol. 336. Iss.3.  pp.745-761. WOS:000188948500014
    102. Nivon, LG; Shakhnovich, EI All-atom Monte Carlo simulation of GCAA RNA folding//JOURNAL OF MOLECULAR BIOLOGY. 2004. Vol. 344. Iss.1.  pp.29-45. WOS:000224926700003
    103. Morrissey, MP; Ahmed, Z; Shakhnovich, EI The role of cotranslation in protein folding: a lattice model study//POLYMER. 2004. Vol. 45. Iss.2.  pp.557-571. WOS:000188045400023
    104. Dominy, BN; Shakhnovich, EI Native atom types for knowledge-based potentials: Application to binding energy prediction//JOURNAL OF MEDICINAL CHEMISTRY. 2004. Vol. 47. Iss.18.  pp.4538-4558. WOS:000223434100019
    105. Tannenbaum, E; Shakhnovich, EI Error and repair catastrophes: A two-dimensional phase diagram in the quasispecies model//PHYSICAL REVIEW E. 2004. Vol. 69. Iss.1.  pp.-11902. WOS:00018894650004
      1. Brumer, Y; Shakhnovich, EI Host-parasite coevolution and optimal mutation rates for semiconservative quasispecies//PHYSICAL REVIEW E. 2004. Vol. 69. Iss.6.  pp.-61909. WOS:000222502700089
      2. Tannenbaum, E; Deeds, EJ; Shakhnovich, EI Semiconservative replication in the quasispecies model//PHYSICAL REVIEW E. 2004. Vol. 69. Iss.6.  pp.-61916. WOS:000222502700096
      3. Geissler, PL; Shakhnovich, EI; Grosberg, AY Solvation versus freezing in a heteropolymer globule//PHYSICAL REVIEW E. 2004. Vol. 70. Iss.2.  pp.-21802. WOS:000223784400040
      4. Tannenbaum, E; Shakhnovich, EI Solution of the quasispecies model for an arbitrary gene network//PHYSICAL REVIEW E. 2004. Vol. 70. Iss.2.  pp.-21903. WOS:000223784400043
      5. Brumer, Y; Shakhnovich, EI Importance of DNA repair in tumor suppression//PHYSICAL REVIEW E. 2004. Vol. 70. Iss.6.  pp.-61912. WOS:000226298700078
      6. Tannenbaum, E; Sherley, JL; Shakhnovich, EI Imperfect DNA lesion repair in the semiconservative quasispecies model: Derivation of the Hamming class equations and solution of the single-fitness peak landscape//PHYSICAL REVIEW E. 2004. Vol. 70. Iss.6.  pp.-61915. WOS:000226298700081
      7. Hubner, IA; Oliveberg, M; Shakhnovich, EI Simulation, experiment, and evolution: Understanding nucleation in protein S6 folding//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004. Vol. 101. Iss.22.  pp.8354-8359. WOS:000221831800020
      8. England, JL; Shakhnovich, BE; Shakhnovich, EI Natural selection of more designable folds: A mechanism for thermophilic adaptation//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003. Vol. 100. Iss.15.  pp.8727-8731. WOS:000184371000026
      9. Pei, JM; Dokholyan, NV; Shakhnovich, EI; Grishin, NV Using protein design for homology detection and active site searches//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003. Vol. 100. Iss.20.  pp.11361-11366. WOS:000185685700035
      10. Lo, LW; Shakhnovich, EI; Mirny, LA Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003. Vol. 100. Iss.8.  pp.4463-4468. WOS:000182306100025
      11. Shakhnovich, BE; Dokholyan, NV; DeLisi, C; Shakhnovich, EI Functional fingerprints of folds: Evidence for correlated structure-function evolution//JOURNAL OF MOLECULAR BIOLOGY. 2003. Vol. 326. Iss.1.  pp.1-9. WOS:000180997600001
      12. Dokholyan, NV; Borreguero, JM; Buldyrev, SV; Ding, F; Stanley, HE; Shakhnovich, EI Identifying importance of amino acids for protein folding from crystal structures//MACROMOLECULAR CRYSTALLOGRAPHY, PT D. 2003. Vol. 374. Iss..  pp.616-+. WOS:000188419600025
      13. Chen, W; Mirny, L; Shakhnovich, EI Fold recognition with minimal gaps//PROTEINS-STRUCTURE FUNCTION AND GENETICS. 2003. Vol. 51. Iss.4.  pp.531-543. WOS:000183386600005
      14. Kussell, E; Shimada, J; Shakhnovich, EI Side-chain dynamics and protein folding//PROTEINS-STRUCTURE FUNCTION AND GENETICS. 2003. Vol. 52. Iss.2.  pp.303-321. WOS:000183923200018
      15. Deeds, EJ; Dokholyan, NV; Shakhnovich, EI Protein evolution within a structural space//BIOPHYSICAL JOURNAL. 2003. Vol. 85. Iss.5.  pp.2962-2972. WOS:000186190500017
      16. England, JL; Shakhnovich, EI Structural determinant of protein designability//PHYSICAL REVIEW LETTERS. 2003. Vol. 90. Iss.21.  pp.-218101. WOS:000183223400055
      17. Tannenbaum, E; Deeds, EJ; Shakhnovich, EI Equilibrium distribution of mutators in the single fitness peak model//PHYSICAL REVIEW LETTERS. 2003. Vol. 91. Iss.13.  pp.-138105. WOS:000185573700054
      18. Dominy, BN; Shakhnovich, EI Structure-based drug design using knowledge-based potentials.//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 226th National Meeting of the American-Chemical-Society. 2003. Vol. 226. Iss..  pp.U444-U444. WOS:000187062402085
      19. Hubner, IA; Shimada, J; Shakhnovich, EI Phi values and the folding transition state of protein G: Utilization and interpretation of experimental data through simulation.//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 226th National Meeting of the American-Chemical-Society. 2003. Vol. 226. Iss..  pp.U450-U450. WOS:000187062402119
      20. Ishchenko, AV; Shakhnovich, EI SMall molecule growth 2001 (SMoG2001): An improved knowledge-based scoring function for protein-ligand interactions//JOURNAL OF MEDICINAL CHEMISTRY. 2002. Vol. 45. Iss.13.  pp.2770-2780. WOS:000176204300009
      21. Li, L; Shakhnovich, EI What is protein engineering telling us about folding: A critical analysis with computer simulations.//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2002. Vol. 224. Iss..  pp.U229-U229. WOS:000177422201045
      22. Dokholyan, NV; Mirny, LA; Shakhnovich, EI Understanding conserved amino acids in proteins//PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. Meeting on Horizons in Complex Systems. 2002. Vol. 314. Iss.41365.  pp.600-606. WOS:000179502800081
      23. Geissler, PL; Shakhnovich, EI Mechanical response of random heteropolymers//MACROMOLECULES. 2002. Vol. 35. Iss.11.  pp.4429-4436. WOS:000175728100031
      24. Grzybowski, BA; Ishchenko, AV; Shimada, J; Shakhnovich, EI From knowledge-based potentials to combinatorial lead design in silico//ACCOUNTS OF CHEMICAL RESEARCH. 2002. Vol. 35. Iss.5.  pp.261-269. WOS:000175775100002
      25. Kussell, E; Shimada, J; Shakhnovich, EI Sidechain dynamics and protein folding//BRIDGING TIME SCALES: MOLECULAR SIMULATIONS FOR THE NEXT DECADE. Conference on Bridging the Time-Scale Gap. 2002. Vol. 605. Iss..  pp.3-24. WOS:000180546600001
      26. Geissler, PL; Shakhnovich, EI Reversible stretching of random heteropolymers//PHYSICAL REVIEW E. 2002. Vol. 65. Iss.5.  pp.-56110. WOS:000176552500026
      27. Mukamel, EA; Shakhnovich, EI Phase diagram for unzipping DNA with long-range interactions//PHYSICAL REVIEW E. 2002. Vol. 66. Iss.3.  pp.-32901. WOS:000178623300079
      28. Ding, F; Dokholyan, NV; Buldyrev, SV; Stanley, HE; Shakhnovich, EI Direct molecular dynamics observation of protein folding transition state ensemble//BIOPHYSICAL JOURNAL. 2002. Vol. 83. Iss.6.  pp.3525-3532. WOS:000180256300055
      29. Kussell, E; Shakhnovich, EI Glassy dynamics of side-chain ordering in a simple model of protein folding//PHYSICAL REVIEW LETTERS. 2002. Vol. 89. Iss.16.  pp.-168101. WOS:000178384300049
      30. Dokholyan, NV; Li, L; Ding, F; Shakhnovich, EI Topological determinants of protein folding//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002. Vol. 99. Iss.13.  pp.8637-8641. WOS:000176478200033
      31. Shimada, J; Shakhnovich, EI The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002. Vol. 99. Iss.17.  pp.11175-11180. WOS:000177606900042
      32. Dokholyan, NV; Shakhnovich, B; Shakhnovich, EI Expanding protein universe and its origin from the biological Big Bang//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002. Vol. 99. Iss.22.  pp.14132-14136. WOS:000178967400032
      33. Grzybowski, BA; Ishchenko, AV; Kim, CY; Topalov, G; Chapman, R; Christianson, DW; Whitesides, GM; Shakhnovich, EI Combinatorial computational method gives new picomolar ligands for a known enzyme//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002. Vol. 99. Iss.3.  pp.1270-1273. WOS:000173752500033
      34. Kussell, E; Shimada, J; Shakhnovich, EI A structure-based method for derivation of all-atom potentials for protein folding//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002. Vol. 99. Iss.8.  pp.5343-5348. WOS:000175087000112
      35. Borreguero, JM; Dokholyan, NV; Buldyrev, SV; Shakhnovich, EI; Stanley, HE Thermodynamics and folding kinetics analysis of the SH3 domain from discrete molecular dynamics//JOURNAL OF MOLECULAR BIOLOGY. 2002. Vol. 318. Iss.3.  pp.863-876. WOS:000175767700021
      36. Ding, F; Dokholyan, NV; Buldyrev, SV; Stanley, HE; Shakhnovich, EI Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism//JOURNAL OF MOLECULAR BIOLOGY. 2002. Vol. 324. Iss.4.  pp.851-857. WOS:000179825300022
      37. Tiana, G; Broglia, RA; Shakhnovich, EI Energy profile of the space of model protein sequences//JOURNAL OF BIOLOGICAL PHYSICS. 2001. Vol. 27. Iss.41335.  pp.147-159. WOS:000172608400005
      38. Li, L; Shakhnovich, EI Different circular permutations produced different folding nuclei in proteins: A computational study//JOURNAL OF MOLECULAR BIOLOGY. 2001. Vol. 306. Iss.1.  pp.121-132. WOS:000166919300011
      39. Shimada, J; Kussell, EL; Shakhnovich, EI The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation//JOURNAL OF MOLECULAR BIOLOGY. 2001. Vol. 308. Iss.1.  pp.79-95. WOS:000168351200009
      40. Berriz, GF; Shakhnovich, EI Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model//JOURNAL OF MOLECULAR BIOLOGY. 2001. Vol. 310. Iss.3.  pp.673-685. WOS:000169985100014
      41. Kussell, E; Shimada, J; Shakhnovich, EI Excluded volume in protein side-chain packing//JOURNAL OF MOLECULAR BIOLOGY. 2001. Vol. 311. Iss.1.  pp.183-193. WOS:000170326500015
      42. Dokholyan, NV; Shakhnovich, EI Understanding hierarchical protein evolution from first principles//JOURNAL OF MOLECULAR BIOLOGY. 2001. Vol. 312. Iss.1.  pp.289-307. WOS:000171047500024
      43. Shimada, J; Kussell, EL; Shakhnovich, EI The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation//PROTEIN FOLDING, EVOLUTION AND DESIGN. NATO Advanced Study Institute on Protein Folding, Evolution and Design. 2001. Vol. 333. Iss..  pp.161-171. WOS:000175524500009
      44. Kussell, E; Shimada, J; Shakhnovich, EI Protein sidechain packing in ubiquitin//PROTEIN FOLDING, EVOLUTION AND DESIGN. NATO Advanced Study Institute on Protein Folding, Evolution and Design. 2001. Vol. 333. Iss..  pp.173-182. WOS:000175524500010
      45. Mirny, L; Shakhnovich, EI Protein folding: Matching theory and experiment//PROTEIN FOLDING, EVOLUTION AND DESIGN. NATO Advanced Study Institute on Protein Folding, Evolution and Design. 2001. Vol. 333. Iss..  pp.37-68. WOS:000175524500004
      46. Pitard, E; Shakhnovich, EI Mode-coupling theory for heteropolymers//PHYSICAL REVIEW E. 2001. Vol. 63. Iss.4.  pp.-41501. WOS:000168214900032
      47. Li, L; Shakhnovich, EI Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001. Vol. 98. Iss.23.  pp.13014-13018. WOS:000172076800035
      48. Grzybowski, BA; Ishchenko, AV; DeWitte, RS; Whitesides, GM; Shakhnovich, EI Development of a knowledge-based potential for crystals of small organic molecules: Calculation of energy surfaces for C=0 center dot center dot center dot H-N hydrogen bonds//JOURNAL OF PHYSICAL CHEMISTRY B. 2000. Vol. 104. Iss.31.  pp.7293-7298. WOS:000088683700009
      49. Choe, SE; Li, LW; Matsudaira, PT; Wagner, G; Shakhnovich, EI Differential stabilization of two hydrophobic cores in the transition state of the villin 14T folding reaction//JOURNAL OF MOLECULAR BIOLOGY. 2000. Vol. 304. Iss.1.  pp.99-115. WOS:000165489600009
      50. Shakhnovich, EI; Shimada, J; Kussell, E Folding thermodynamics and kinetics: Insights from all-atom simulations.//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2000. Vol. 220. Iss..  pp.U167-U167. WOS:000166091300901
      51. Dokholyan, NV; Buldyrev, SV; Stanley, HE; Shakhnovich, EI Identifying the protein folding nucleus using molecular dynamics//JOURNAL OF MOLECULAR BIOLOGY. 2000. Vol. 296. Iss.5.  pp.1183-1188. WOS:000085774200003
      52. Abkevich, VI; Shakhnovich, EI What can disulfide bonds tell us about protein energetics, function and folding: Simulations and bioninformatics analysis//JOURNAL OF MOLECULAR BIOLOGY. 2000. Vol. 300. Iss.4.  pp.975-985. WOS:000088508500023
      53. Tiana, G; Broglia, RA; Shakhnovich, EI Hiking in the energy landscape in sequence space: A bumpy road to good folders//PROTEINS-STRUCTURE FUNCTION AND GENETICS. 2000. Vol. 39. Iss.3.  pp.244-251. WOS:000086552700007
      54. Vendruscolo, M; Mirny, LA; Shakhnovich, EI; Domany, E Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z score//PROTEINS-STRUCTURE FUNCTION AND GENETICS. 2000. Vol. 41. Iss.2.  pp.192-201. WOS:000089770400004
      55. Wilder, J; Shakhnovich, EI Proteins with selected sequences: A heteropolymeric study//PHYSICAL REVIEW E. 2000. Vol. 62. Iss.5.  pp.7100-7110. WOS:000165341900049
      56. Li, L; Mirny, LA; Shakhnovich, EI Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus//NATURE STRUCTURAL BIOLOGY. 2000. Vol. 7. Iss.4.  pp.336-342. WOS:000086256100020
      57. Grzybowski, BA; Anderson, JR; Colton, I; Brittain, ST; Shakhnovich, EI; Whitesides, GM Modeling the kinetics of acylation of insulin using a recursive method for solving the systems of coupled differential equations//BIOPHYSICAL JOURNAL. 2000. Vol. 78. Iss.2.  pp.652-661. WOS:000085249300009
      58. Shimada, J; Ishchenko, AV; Shakhnovich, EI Analysis of knowledge-based protein-ligand potentials using a self-consistent method//PROTEIN SCIENCE. 2000. Vol. 9. Iss.4.  pp.765-775. WOS:000086505200016
      59. Mirny, LA; Finkelstein, AV; Shakhnovich, EI Statistical significance of protein structure prediction by threading//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2000. Vol. 97. Iss.18.  pp.9978-9983. WOS:000089067500032
      60. Dokholyan, NV; Buldyrev, SV; Stanley, HE; Shakhnovich, EI Kinetics of the protein folding transition//STATISTICAL PHYSICS. 3rd Tohwa University International Conference on Statistical Physics. 2000. Vol. 519. Iss..  pp.419-425. WOS:000088786100083
      61. Morrissey, MP; Shakhnovich, EI Evidence for the role of PrPC helix 1 in the hydrophilic seeding of prion aggregates//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1999. Vol. 96. Iss.20.  pp.11293-11298. WOS:000082868500069
      62. Chou, JJ; Shakhnovich, EI A study on local-global cooperativity in protein collapse//JOURNAL OF PHYSICAL CHEMISTRY B. 1999. Vol. 103. Iss.13.  pp.2535-2542. WOS:000079612000028
      63. Mirny, LA; Shakhnovich, EI Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function//JOURNAL OF MOLECULAR BIOLOGY. 1999. Vol. 291. Iss.1.  pp.177-196. WOS:000081903500013
      64. Berriz, GF; Shakhnovich, EI The well-tempered protein//CURRENT OPINION IN COLLOID & INTERFACE SCIENCE. 1999. Vol. 4. Iss.1.  pp.72-82. WOS:000080941800011
      65. Финкельштейн АВ, Рыкунов ДС, Лобанов МЮ, Бадретдинов АЯ, Рева БА, Сколник Д, Мирный ЛА, Шахнович ЕИ Как и когда отдаленные гомологи могут превозмочь погрешности энергетических оценок и сделать возможным предсказание пространственных структур белков // Биофизика.- 1999.- T. 44, № 6.- C. 980-991.
      66. Roan, JR; Shakhnovich, EI Phase separation of a binary fluid containing surfactants in a Hele-Shaw cell//PHYSICAL REVIEW E. 1999. Vol. 59. Iss.2.  pp.2109-2125. WOS:000078779700025
      67. Shakhnovich, EI Folding by association//NATURE STRUCTURAL BIOLOGY. 1999. Vol. 6. Iss.2.  pp.99-102. WOS:000078285100002
      68. Qi, SY; Chakraborty, AK; Wang, H; Lefebvre, AA; Balsara, NP; Shakhnovich, EI; Xenidou, M; Hadjichristidis, N Microphase ordering in melts of randomly grafted copolymers//PHYSICAL REVIEW LETTERS. 1999. Vol. 82. Iss.14.  pp.2896-2899. WOS:000079490800022
      69. Kussell, EL; Shakhnovich, EI Analytical approach to the protein design problem//PHYSICAL REVIEW LETTERS. 1999. Vol. 83. Iss.21.  pp.4437-4440. WOS:000083745600054
      70. Morrissey, MP; Shakhnovich, EI Complete structure reconstruction for model proteins using mutation calorimetry//OLD AND NEW VIEWS OF PROTEIN FOLDING. 24th Taniguchi International Symposium, Division of Biophysics. 1999. Vol. 1194. Iss..  pp.107-116. WOS:000084507600011
      71. Finkelstein, AV; Rykunov, DS; Lobanov, MY; Badretdinov, AY; Reva, BA; Skolnick, J; Mirny, LA; Shakhnovich, EI When and how the homologs can overcome errors in the energy estimates and make the 3D structure prediction possible//BIOFIZIKA. 1999. Vol. 44. Iss.6.  pp.980-991. WOS:000084920600002
      72. Choe, SE; Matsudaira, PT; Osterhout, J; Wagner, G; Shakhnovich, EI Folding kinetics of villin 14T, a protein domain with a central beta-sheet and two hydrophobic cores//BIOCHEMISTRY. 1998. Vol. 37. Iss.41.  pp.14508-14518. WOS:000076485000021
      73. Gutin, A; Sali, A; Abkevich, V; Karplus, M; Shakhnovich, EI Temperature dependence of the folding rate in a simple protein model: Search for a "glass" transition//JOURNAL OF CHEMICAL PHYSICS. 1998. Vol. 108. Iss.15.  pp.6466-6483. WOS:000073073700044
      74. Chakraborty, AK; Shakhnovich, EI; Pande, VS Freezing of compact random heteropolymers with correlated sequence fluctuations//JOURNAL OF CHEMICAL PHYSICS. 1998. Vol. 108. Iss.4.  pp.1683-1687. WOS:000071500300045
      75. Roan, JR; Shakhnovich, EI Stability study of icosahedral phases in diblock copolymer melt//JOURNAL OF CHEMICAL PHYSICS. 1998. Vol. 109. Iss.17.  pp.7591-7611. WOS:000076630100058
      76. Mirny, LA; Shakhnovich, EI Protein structure prediction by threading. Why it works and why it does not//JOURNAL OF MOLECULAR BIOLOGY. 1998. Vol. 283. Iss.2.  pp.507-526. WOS:000076516900014
      77. Abkevich, VI; Gutin, AM; Shakhnovich, EI Theory of kinetic partitioning in protein folding with possible applications to prions//PROTEINS-STRUCTURE FUNCTION AND GENETICS. 1998. Vol. 31. Iss.4.  pp.335-344. WOS:000074100800001
      78. Gutin, AM; Abkevich, VI; Shakhnovich, EI A protein engineering analysis of the transition state for protein folding: simulation in the lattice model//FOLDING & DESIGN. 1998. Vol. 3. Iss.3.  pp.183-194. WOS:000074170500005
      79. Shakhnovich, EI Protein design: a perspective from simple tractable models//FOLDING & DESIGN. 1998. Vol. 3. Iss.3.  pp.R45-R58. WOS:000074170500001
      80. Shakhnovich, EI Folding nucleus: specific or multiple? Insights from lattice models and experiments//FOLDING & DESIGN. 1998. Vol. 3. Iss.6.  pp.R108-R111. WOS:000078041700002
      81. Dokholyan, NV; Buldyrev, SV; Stanley, HE; Shakhnovich, EI Discrete molecular dynamics studies of the folding of a protein-like model//FOLDING & DESIGN. 1998. Vol. 3. Iss.6.  pp.577-587. WOS:000078041700017
      82. Mammen, M; Shakhnovich, EI; Whitesides, GM Using a convenient, quantitative model for torsional entropy to establish qualitative trends for molecular processes that restrict conformational freedom//JOURNAL OF ORGANIC CHEMISTRY. 1998. Vol. 63. Iss.10.  pp.3168-3175. WOS:000073769600008
      83. Mammen, M; Shakhnovich, EI; Deutch, JM; Whitesides, GM Estimating the entropic cost of self-assembly of multiparticle hydrogen-bonded aggregates based on the cyanuric acid center dot melamine lattice//JOURNAL OF ORGANIC CHEMISTRY. 1998. Vol. 63. Iss.12.  pp.3821-3830. WOS:000074277100011
      84. Fersht, AR; Shakhnovich, EI Protein folding: Think globally, (inter)act locally//CURRENT BIOLOGY. 1998. Vol. 8. Iss.14.  pp.R478-R479. WOS:000074593600006
      85. Bratko, D; Chakraborty, AK; Shakhnovich, EI Adsorption of random copolymers on disordered surfaces//COMPUTATIONAL AND THEORETICAL POLYMER SCIENCE. 1998. Vol. 8. Iss.41306.  pp.113-126. WOS:000075240500014
      86. Mirny, LA; Abkevich, VI; Shakhnovich, EI How evolution makes proteins fold quickly//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1998. Vol. 95. Iss.9.  pp.4976-4981. WOS:000073415700036
      87. Berriz, GF; Gutin, AM; Shakhnovich, EI Cooperativity and stability in a Langevin model of proteinlike folding//JOURNAL OF CHEMICAL PHYSICS. 1997. Vol. 106. Iss.22.  pp.9276-9285. WOS:A1997XB87900032
      88. Bratko, D; Chakraborty, AK; Shakhnovich, EI The structure of a random heteropolymer in a disordered medium: Ensemble growth simulation//JOURNAL OF CHEMICAL PHYSICS. 1997. Vol. 106. Iss.3.  pp.1264-1279. WOS:A1997WD07000043
      89. Shakhnovich, EI Unravelling mechanisms of protein folding, evolution and design.//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 1997. Vol. 213. Iss..  pp.63-COMP. WOS:A1997WP18502695
      90. Bratko, D; Chakraborty, AK; Shakhnovich, EI Recognition between random heteropolymers and multifunctional disordered surfaces//CHEMICAL PHYSICS LETTERS. 1997. Vol. 280. Iss.41306.  pp.46-52. WOS:000071188400008
      91. Sfatos, CD; Shakhnovich, EI Statistical mechanics of random heteropolymers//PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS. 1997. Vol. 288. Iss.41426.  pp.77-108. WOS:A1997XZ71100005
      92. Shakhnovich, EI Theoretical studies of protein-folding thermodynamics and kinetics//CURRENT OPINION IN STRUCTURAL BIOLOGY. 1997. Vol. 7. Iss.1.  pp.29-40. WOS:A1997WK09000005
      93. Chakraborty, AK; Shakhnovich, EI Polymer adsorption on disordered substrates - Reply//PHYSICAL REVIEW LETTERS. 1997. Vol. 79. Iss.24.  pp.4931-4931. WOS:A1997YL24400054
      94. DeWitte, RS; Ishchenko, AV; Shakhnovich, EI SMoG: De novo design method based on simple, fast, and accurate free energy estimates .2. Case studies in molecular design//JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 1997. Vol. 119. Iss.20.  pp.4608-4617. WOS:A1997XA48000005
      95. DeWitte, RS; Shakhnovich, EI SMoG: de Novo design method based on simple, fast, and accurate free energy estimates .1. Methodology and supporting evidence//JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 1996. Vol. 118. Iss.47.  pp.11733-11744. WOS:A1996VV33700006
      96. Mirny, LA; Abkevich, V; Shakhnovich, EI Universality and diversity of the protein folding scenarios: A comprehensive analysis with the aid of a lattice model//FOLDING & DESIGN. 1996. Vol. 1. Iss.2.  pp.103-116. WOS:A1996WC40300005
      97. Abkevich, VI; Gutin, AM; Shakhnovich, EI Improved design of stable and fast-folding model proteins//FOLDING & DESIGN. 1996. Vol. 1. Iss.3.  pp.221-230. WOS:A1996WC40400008
      98. Shakhnovich, EI Modeling protein folding: The beauty and power of simplicity//FOLDING & DESIGN. 1996. Vol. 1. Iss.3.  pp.R50-R54. WOS:A1996WC40400002
      99. Morrissey, MP; Shakhnovich, EI Design of proteins with selected thermal properties//FOLDING & DESIGN. 1996. Vol. 1. Iss.5.  pp.391-405. WOS:A1996WC40600009
      100. Mirny, LA; Shakhnovich, EI How to derive a protein folding potential? A new approach to an old problem//JOURNAL OF MOLECULAR BIOLOGY. 1996. Vol. 264. Iss.5.  pp.1164-1179. WOS:A1996VZ95100024
      101. Sfatos, CD; Gutin, AM; Abkevich, VI; Shakhnovich, EI Simulations of chaperone-assisted folding//BIOCHEMISTRY. 1996. Vol. 35. Iss.1.  pp.334-339. WOS:A1996TP48200042
      102. Shakhnovich E, Abkevich V, Ptitsyn Conserved residues and the mechanism of protein folding // NATURE.- LONDON: MACMILLAN MAGAZINES LTD.- 1996.- Vol. 379, № 6560.- P. 96-98.
      103. Roan, JR; Shakhnovich, EI Dynamics of heteropolymers in dilute solution: Effective equation of motion and relaxation spectrum//PHYSICAL REVIEW E. 1996. Vol. 54. Iss.5.  pp.5340-5357. WOS:A1996VU53700109
      104. Bratko, D; Chakraborty, AK; Shakhnovich, EI Frozen phases of random heteropolymers in disordered media//PHYSICAL REVIEW LETTERS. 1996. Vol. 76. Iss.11.  pp.1844-1847. WOS:A1996TZ28200021
      105. Gutin, AM; Abkevich, VI; Shakhnovich, EI Chain length scaling of protein folding time//PHYSICAL REVIEW LETTERS. 1996. Vol. 77. Iss.27.  pp.5433-5436. WOS:A1996WA09300031
      106. Abkevich, VI; Gutin, AM; Shakhnovich, EI How the first biopolymers could have evolved//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1996. Vol. 93. Iss.2.  pp.839-844. WOS:A1996TR32600059
      107. Srebnik, S; Chakraborty, AK; Shakhnovich, EI Adsorption-freezing transition for random heteropolymers near disordered 2D manifolds due to ''pattern matching''//PHYSICAL REVIEW LETTERS. 1996. Vol. 77. Iss.15.  pp.3157-3160. WOS:A1996VL09600025
      108. Abkevich, VI; Gutin, AM; Shakhnovich, EI Computer simulations of prebiotic evolution//PACIFIC SYMPOSIUM ON BIOCOMPUTING '97. 2nd Pacific Symposium on Biocomputing (PSB). 1996. Vol. Iss..  pp.27-38. WOS:A1996BH75M00009
      109. Chakraborty, AK; Shakhnovich, EI Phase behavior of random copolymers in quenched random media//JOURNAL OF CHEMICAL PHYSICS. 1995. Vol. 103. Iss.24.  pp.10751-10763. WOS:A1995TL51700040
      110. MA, JP; STRAUB, JE; SHAKHNOVICH, EI SIMULATION STUDY OF THE COLLAPSE OF LINEAR AND RING HOMOPOLYMERS//JOURNAL OF CHEMICAL PHYSICS. 1995. Vol. 103. Iss.7.  pp.2615-2624. WOS:A1995RP45500024
      111. SHAKHNOVICH, EI STATISTICAL-MECHANICS OF IN-VITRO AND IN-VIVO PROTEIN//ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 1995. Vol. 210. Iss..  pp.95-PHYS. WOS:A1995RP25901011
      112. ABKEVICH, VI; GUTIN, AM; SHAKHNOVICH, EI IMPACT OF LOCAL AND NONLOCAL INTERACTIONS ON THERMODYNAMICS AND KINETICS OF PROTEIN-FOLDING//JOURNAL OF MOLECULAR BIOLOGY. 1995. Vol. 252. Iss.4.  pp.460-471. WOS:A1995RX45800008
      113. GUTIN, AM; ABKEVICH, VI; SHAKHNOVICH, EI IS BURST HYDROPHOBIC COLLAPSE NECESSARY FOR PROTEIN-FOLDING//BIOCHEMISTRY. 1995. Vol. 34. Iss.9.  pp.3066-3076. WOS:A1995QK93400038
      114. ABKEVICH, VI; GUTIN, AM; SHAKHNOVICH, EI DOMAINS IN FOLDING OF MODEL PROTEINS//PROTEIN SCIENCE. 1995. Vol. 4. Iss.6.  pp.1167-1177. WOS:A1995RF13500015
      115. DEWITTE, RS; MICHNICK, SW; SHAKHNOVICH, EI EXHAUSTIVE ENUMERATION OF PROTEIN CONFORMATIONS USING EXPERIMENTAL RESTRAINTS//PROTEIN SCIENCE. 1995. Vol. 4. Iss.9.  pp.1780-1791. WOS:A1995RW79000013
      116. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI CRITICAL COMPOSITIONS IN THE MICROPHASE SEPARATION TRANSITION OF RANDOM COPOLYMERS//PHYSICAL REVIEW E. 1995. Vol. 51. Iss.5.  pp.4727-4734. WOS:A1995QZ15500023
      117. YUE, K; FIEBIG, KM; THOMAS, PD; CHAN, HS; SHAKHNOVICH, EI; DILL, KA A TEST OF LATTICE PROTEIN-FOLDING ALGORITHMS//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1995. Vol. 92. Iss.1.  pp.325-329. WOS:A1995QB23800067
      118. GUTIN, AM; ABKEVICH, VI; SHAKHNOVICH, EI EVOLUTION-LIKE SELECTION OF FAST-FOLDING MODEL PROTEINS//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1995. Vol. 92. Iss.5.  pp.1282-1286. WOS:A1995QK07700009
      119. SHAKHNOVICH, EI STATISTICAL-MECHANICS OF PROTEIN-FOLDING AND EVOLUTION//FASEB JOURNAL. 1995. Vol. 9. Iss.6.  pp.A1239-A1239. WOS:A1995QV27400005
      120. SHAKHNOVICH, EI PROTEINS WITH SELECTED SEQUENCES FOLD INTO UNIQUE NATIVE CONFORMATION (VOL 72, PG 3907, 1994)//PHYSICAL REVIEW LETTERS. 1995. Vol. 74. Iss.13.  pp.2618-2618. WOS:A1995QP22900056
      121. GUTIN, AM; SHAKHNOVICH, EI STATISTICAL-MECHANICS OF POLYMERS WITH DISTANCE CONSTRAINTS//JOURNAL OF CHEMICAL PHYSICS. 1994. Vol. 100. Iss.7.  pp.5290-5293. WOS:A1994ND25400057
      122. ABKEVICH, VI; GUTIN, AM; SHAKHNOVICH, EI FREE-ENERGY LANDSCAPE FOR PROTEIN-FOLDING KINETICS - INTERMEDIATES, TRAPS, AND MULTIPLE PATHWAYS IN THEORY AND LATTICE MODEL SIMULATIONS//JOURNAL OF CHEMICAL PHYSICS. 1994. Vol. 101. Iss.7.  pp.6052-6062. WOS:A1994PH98700063
      123. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI FREEZING AND MICROPHASE SEPARATION IN RANDOM COPOLYMERS//NUOVO CIMENTO DELLA SOCIETA ITALIANA DI FISICA D-CONDENSED MATTER ATOMIC MOLECULAR AND CHEMICAL PHYSICS FLUIDS PLASMAS BIOPHYSICS. I International Conference on Scaling Concepts and Complex Fluids. 1994. Vol. 16. Iss.7.  pp.873-877. WOS:A1994QR29400031
      124. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI FLUCTUATION EFFECTS ON MICROPHASE SEPARATION IN RANDOM COPOLYMERS//NUOVO CIMENTO DELLA SOCIETA ITALIANA DI FISICA D-CONDENSED MATTER ATOMIC MOLECULAR AND CHEMICAL PHYSICS FLUIDS PLASMAS BIOPHYSICS. I International Conference on Scaling Concepts and Complex Fluids. 1994. Vol. 16. Iss.7.  pp.879-882. WOS:A1994QR29400032
      125. SHAKHNOVICH, EI DESIGN OF MODEL FAST-FOLDING PROTEINS//PROTEIN STRUCTURE BY DISTANCE ANALYSIS. Symposium on Distance Based Approaches to Protein Structure Determination. 1994. Vol. Iss..  pp.201-212. WOS:A1994BA69M00016
      126. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI FLUCTUATION EFFECTS ON MICROPHASE SEPARATION IN A RANDOM COPOLYMER HAMILTONIAN//JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 1994. Vol. 27. Iss.12.  pp.L411-L416. WOS:A1994NT81900003
      127. GUTIN, AM; SFATOS, CD; SHAKHNOVICH, EI FLUCTUATION EFFECTS ON MICROPHASE SEPARATION IN RANDOM COPOLYMERS//JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 1994. Vol. 27. Iss.24.  pp.7957-7968. WOS:A1994PY74100008
      128. SHAKHNOVICH, EI ENUMERATION WITH CONSTRAINTS - A POSSIBLE APPROACH TO PROTEIN-STRUCTURE RECONSTRUCTION FROM NMR DATA//STATISTICAL MECHANICS, PROTEIN STRUCTURE, AND PROTEIN SUBSTRATE INTERACTIONS. NATO Advanced Research Workshop on Statistical Mechanics, Protein Structure, and Protein Substrate Interactions. 1994. Vol. 325. Iss..  pp.209-223. WOS:A1994BB65Q00019
      129. ABKEVICH, VI; GUTIN, AM; SHAKHNOVICH, EI SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL//BIOCHEMISTRY. 1994. Vol. 33. Iss.33.  pp.10026-10036. WOS:A1994PD21900029
      130. DEWITTE, RS; SHAKHNOVICH, EI PSEUDODIHEDRALS - SIMPLIFIED PROTEIN BACKBONE REPRESENTATION WITH KNOWLEDGE-BASED ENERGY//PROTEIN SCIENCE. 1994. Vol. 3. Iss.9.  pp.1570-1581. WOS:A1994PK83000022
      131. ARCHONTIS, GZ; SHAKHNOVICH, EI PHASE-TRANSITIONS IN HETEROPOLYMERS WITH SECONDARY STRUCTURE//PHYSICAL REVIEW E. 1994. Vol. 49. Iss.4.  pp.3109-3123. WOS:A1994NJ37900074
      132. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI PHASE-TRANSITIONS IN A MANY-LETTER RANDOM HETEROPOLYMER//PHYSICAL REVIEW E. 1994. Vol. 50. Iss.4.  pp.2898-2905. WOS:A1994PP11800068
      133. GUTIN, AM; SHAKHNOVICH, EI EFFECT OF A NET CHARGE ON THE CONFORMATION OF POLYAMPHOLYTES//PHYSICAL REVIEW E. 1994. Vol. 50. Iss.5.  pp.R3322-R3325. WOS:A1994PV86300010
      134. DEWITTE, RS; SHAKHNOVICH, EI PSEUDODIHEDRALS - SIMPLIFIED BACKBONE REPRESENTATION WITH KNOWLEDGE-BASED ENERGY//BIOPHYSICAL JOURNAL. 1994. Vol. 66. Iss.2.  pp.A395-A395. WOS:A1994MU46202296
      135. SHAKHNOVICH, EI PROTEINS WITH SELECTED SEQUENCES FOLD INTO UNIQUE NATIVE CONFORMATION//PHYSICAL REVIEW LETTERS. 1994. Vol. 72. Iss.24.  pp.3907-3910. WOS:A1994NT46000041
      136. GUTIN, AM; GROSBERG, AY; SHAKHNOVICH, EI MICROPHASE SEPARATION IN RANDOMLY BRANCHED POLYMERS//MACROMOLECULES. 1993. Vol. 26. Iss.14.  pp.3598-3600. WOS:A1993LL41700018
      137. GUTIN, AM; GROSBERG, AY; SHAKHNOVICH, EI GLOBULAR STATE OF BRANCHED RANDOM HETEROPOLYMERS//JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 1993. Vol. 26. Iss.5.  pp.1037-1049. WOS:A1993KT27900023
      138. GUTIN, AM; GROSBERG, AY; SHAKHNOVICH, EI POLYMERS WITH ANNEALED AND QUENCHED BRANCHINGS BELONG TO DIFFERENT UNIVERSALITY CLASSES//MACROMOLECULES. 1993. Vol. 26. Iss.6.  pp.1293-1295. WOS:A1993KT64900016
      139. SFATOS, CD; GUTIN, AM; SHAKHNOVICH, EI PHASE-DIAGRAM OF RANDOM COPOLYMERS//PHYSICAL REVIEW E. 1993. Vol. 48. Iss.1.  pp.465-475. WOS:A1993LN69700056
      140. SHAKHNOVICH, EI; GUTIN, AM A NEW APPROACH TO THE DESIGN OF STABLE PROTEINS//PROTEIN ENGINEERING. 1993. Vol. 6. Iss.8.  pp.793-800. WOS:A1993MJ45200001
      141. SHAKHNOVICH, EI; GUTIN, AM ENGINEERING OF STABLE AND FAST-FOLDING SEQUENCES OF MODEL PROTEINS//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1993. Vol. 90. Iss.15.  pp.7195-7199. WOS:A1993LQ33500063
      142. GUTIN, AM; SHAKHNOVICH, EI GROUND-STATE OF RANDOM COPOLYMERS AND THE DISCRETE RANDOM ENERGY-MODEL//JOURNAL OF CHEMICAL PHYSICS. 1993. Vol. 98. Iss.10.  pp.8174-8177. WOS:A1993LC87000053
      143. SHAKHNOVICH, EI; GUTIN, AM INFLUENCE OF POINT MUTATIONS ON PROTEIN-STRUCTURE - PROBABILITY OF AF A NEUTRAL MUTATION//JOURNAL OF THEORETICAL BIOLOGY. 1991. Vol. 149. Iss.4.  pp.537-546. WOS:A1991FM54300007
      144. Shakhnovich E, Farztdinov G, Gutin AM, Karplus M Protein folding bottlenecks: A lattice Monte Carlo simulation // Phys. Rev. Lett..- 1991.- Vol. 67, № 12.- P. 1665-1668.
      145. SHAKHNOVICH, EI; GUTIN, AM IMPLICATIONS OF THERMODYNAMICS OF PROTEIN FOLDING FOR EVOLUTION OF PRIMARY SEQUENCES//NATURE. 1990. Vol. 346. Iss.6286.  pp.773-775. WOS:A1990DV65200072
      146. FERNANDEZ, A; SHAKHNOVICH, EI ACTIVATION-ENERGY LANDSCAPE FOR METASTABLE RNA FOLDING//PHYSICAL REVIEW A. 1990. Vol. 42. Iss.6.  pp.3657-3659. WOS:A1990DZ56500066
      147. GAREL, T; ORLAND, H; SHAKHNOVICH, EI RANDOM HETEROPOLYMERS IN LAYERED FLUIDS//JOURNAL OF CHEMICAL PHYSICS. 1990. Vol. 93. Iss.3.  pp.2043-2047. WOS:A1990DQ68900063
      148. Shakhnovich E, Gutin A Enumeration of all compact conformations of copolymers with random sequence of links // J. Chem. Phys..- 1990.- Vol. 93, № 8.- P. 5967-5971.
      149. SHAKHNOVICH, EI; FINKELSTEIN, AV THEORY OF COOPERATIVE TRANSITIONS IN PROTEIN MOLECULES .1. WHY DENATURATION OF GLOBULAR PROTEIN IS A 1ST-ORDER PHASE-TRANSITION//BIOPOLYMERS. 1989. Vol. 28. Iss.10.  pp.1667-1680. WOS:A1989AT83900002
      150. Shakhnovich EI, Gutin AM Protein folding as pattern recognition // STUDIA BIOPHYSICA.- 1989.- Vol. 132, № 1-2.- P. 47-56.
      151. SHAKHNOVICH, EI; GUTIN, AM FROZEN STATES OF A DISORDERED GLOBULAR HETEROPOLYMER//JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 1989. Vol. 22. Iss.10.  pp.1647-1659. WOS:A1989U705500019
      152. Shakhnovich EI, Finkelstein AV Theory of cooperative transition in protein molecules. I. Why denaturation of globular protein is a first-order phase transition // Biopolymers.- 1989.- Vol. 28, № 10.- P. 1667-1680.
      153. SHAKHNOVICH, EI; GUTIN, AM FORMATION OF UNIQUE STRUCTURE IN POLYPEPTIDE-CHAINS THEORETICAL INVESTIGATION WITH THE AID OF A REPLICA APPROACH//BIOPHYSICAL CHEMISTRY. 1989. Vol. 34. Iss.3.  pp.187-199. WOS:A1989CF70100001
      154. SHAKHNOVICH, EI; GUTIN, AM FORMATION OF MICRODOMAINS IN A QUENCHED DISORDERED HETEROPOLYMER//JOURNAL DE PHYSIQUE. 1989. Vol. 50. Iss.14.  pp.1843-1850. WOS:A1989AG37700005
      155. SHAKHNOVICH, EI; GUTIN, AM THE NONERGODIC (SPIN-GLASS-LIKE) PHASE OF HETEROPOLYMER WITH QUENCHED DISORDERED SEQUENCE OF LINKS//EUROPHYSICS LETTERS. 1989. Vol. 8. Iss.4.  pp.327-332. WOS:A1989T289300005
      156. SHAKHNOVICH, EI; GUTIN, AM RELAXATION TO EQUILIBRIUM IN THE RANDOM ENERGY-MODEL//EUROPHYSICS LETTERS. 1989. Vol. 9. Iss.6.  pp.569-574. WOS:A1989AF35800013
      157. GUTIN, AM; SHAKHNOVICH, EI NONERGODIC STATE OF HETEROPOLYMER GLOBULES//ZHURNAL EKSPERIMENTALNOI I TEORETICHESKOI FIZIKI. 1989. Vol. 96. Iss.6.  pp.2096-2107. WOS:A1989CF63200019
      158. FINKELSTEIN, AV; SHAKHNOVICH, EI THEORY OF COOPERATIVE TRANSITIONS IN PROTEIN MOLECULES .2. PHASE-DIAGRAM FOR A PROTEIN MOLECULE IN SOLUTION//BIOPOLYMERS. 1989. Vol. 28. Iss.10.  pp.1681-1694. WOS:A1989AT83900003
      159. SHVARTS, VS; SHAKHNOVICH, EI SPECIFICITY OF THE COPLANAR INTERACTIONS OF NITROGEN BASES IN AQUEOUS-MEDIUM//DOKLADY AKADEMII NAUK SSSR. 1988. Vol. 298. Iss.5.  pp.1269-1272. WOS:A1988M271200061
      160. GROSBERG, AY; NECHAEV, SK; SHAKHNOVICH, EI ROLE OF TOPOLOGICAL LIMITATIONS IN THE KINETICS OF HOMOPOLYMER COLLAPSE AND IN SELFORGANIZATION OF BIO-POLYMERS//BIOFIZIKA. 1988. Vol. 33. Iss.2.  pp.247-253. WOS:A1988M738200011
      161. Шахнович ЕИ, Финкельштейн АВ Теория кооперативных переходов в белковых молекулах. I. Почему денатурация глобулярного белка является фазовым переходом первого рода? // Структура и биосинтез белков.- Пущино.- 1988.- T. 3.- C. 52-69.
      162. Финкельштейн АВ, Шахнович ЕИ Теория кооперативных переходов в белковых молекулах. II. Диаграмма состояний белковой молекулы в растворе // Структура и биосинтез белков.- Пущино.- 1988.- T. 3.- C. 70-86.
      163. GROSBERG, AY; NECHAEV, SK; SHAKHNOVICH, EI THE ROLE OF TOPOLOGICAL CONSTRAINTS IN THE KINETICS OF COLLAPSE OF MACROMOLECULES//JOURNAL DE PHYSIQUE. 1988. Vol. 49. Iss.12.  pp.2095-2100. WOS:A1988R451300015
      164. GROSBERG, AY; SHAKHNOVICH, EI SOLID INTERACTIONS IN STATISTICAL PHYSICS OF BIO-POLYMERS//BIOFIZIKA. 1987. Vol. 32. Iss.6.  pp.949-959. WOS:A1987L136800002
      165. Гросберг АЮ, Шахнович ЕИ К теории гетерополимеров с замороженной беспорядочной первичной структурой: свойства глобулярного состояния, переходы типа клубок-глобула, возможные биофизические приложения // Биофизика.- 1986.- T. 31, № 6.- C. 1045-1057.
      166. GROSBERG, AY; SHAKHNOVICH, EI CONFIGURATIONAL STATISTICS OF A POLYMER-CHAIN IN AN EXTERNAL-FIELD STUDIED BY THE RENORMALIZATION-GROUP TECHNIQUE//ZHURNAL EKSPERIMENTALNOI I TEORETICHESKOI FIZIKI. 1986. Vol. 91. Iss.3.  pp.837-850. WOS:A1986E437600012
      167. GROSBERG, AY; SHAKHNOVICH, EI THE THEORY OF COIL-GLOBULE TYPE PHASE-TRANSITIONS IN A HETEROPOLYMER CHAIN WITH RANDOM SEQUENCE OF LINKS//ZHURNAL EKSPERIMENTALNOI I TEORETICHESKOI FIZIKI. 1986. Vol. 91. Iss.6.  pp.2159-2170. WOS:A1986F487200019
      168. PTITSYN, OB; DOLGIKH, DA; GILMANSHIN, RI; SHAKHNOVICH, EI; FINKELSHTEIN, AV OSCILLATING STATE OF THE PROTEIN GLOBULE//MOLECULAR BIOLOGY. 1983. Vol. 17. Iss.3.  pp.451-456. WOS:A1983RW50400001
      169. Птицын ОБ, Долгих ДА, Гильманшин РИ, Шахнович ЕИ, Финкельштейн АВ Флуктуирующее состояние белковой глобулы // Молекуляр. биология.- 1983.- T. 17, № 3.- C. 569-576.
      170. SHAKHNOVICH, EI; FINKELSTEIN, AV ON THE THEORY OF COOPERATIVE TRANSITIONS IN PROTEIN GLOBULES//DOKLADY AKADEMII NAUK SSSR. 1982. Vol. 267. Iss.5.  pp.1247-1250. WOS:A1982PY93300061
      171. GILMANSHIN, RI; DOLGIKH, DA; PTITSIN, OB; FINKELSHTEIN, AV; SHAKHNOVICH, EI PROTEIN GLOBULES WITHOUT UNIQUE SPATIAL STRUCTURE - EXPERIMENTAL-DATA FOR ALPHA-LACTALBUMINS AND GENERAL-MODEL//BIOFIZIKA. 1982. Vol. 27. Iss.6.  pp.1005-1016. WOS:A1982PU29000010
      172. GROSBERG, AY; ERUKHIMOVICH, IY; SHAKHNOVICH, EI THE THEORY OF DNA COMPACTIZATION IN POLYMERIC SOLUTION//BIOFIZIKA. 1981. Vol. 26. Iss.5.  pp.897-905. WOS:A1981ML38800030
      173. SHAKHNOVICH, EI HELIX-COILED TRANSITION IN HETEROPOLYMERIC CHAINS IN THE CASE OF COOPERATIVITY ENERGY DEPENDING UPON THE TYPE OF BOUNDARIES BETWEEN HELIX AND COILED SEGMENTS//BIOFIZIKA. 1980. Vol. 25. Iss.4.  pp.594-599. WOS:A1980KC45800003



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