Гарбузинский Сергей Александрович

к.ф.-м.н., ИБ РАН

Список статей

    1. Finkelstein, AV; Garbuzynskiy, SO Levinthal's question answered ... again?//JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2013, Vol.31, Is.9, pp1013-1015, DOI:10.1080/07391102.2012.748544, WOS:000323027400018
    2. Finkelstein, AV; Bogatyreva, NS; Garbuzynskiy, SO Restrictions to protein folding determined by the protein size//FEBS LETTERS, 2013, Vol.587, Is.13, pp1884-1890, DOI:10.1016/j.febslet.2013.04.041, WOS:000320910300010
    3. Garbuzynskiy, SO; Ivankov, DN; Bogatyreva, NS; Finkelstein, AV Golden triangle for folding rates of globular proteins//PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, Vol.110, Is.1, pp147-150, DOI:10.1073/pnas.1210180110, WOS:000313630300041
    4. Lobanov, MY; Garbuzynskiy, SO; Galzitskaya, OV Statistical analysis of unstructured amino acid residues in protein structures//BIOCHEMISTRY-MOSCOW, 2010, Vol.75, Is.2, pp192-200, DOI:10.1134/S0006297910020094, WOS:000275459700009
    5. Garbuzynskiy, SO; Lobanov, MY; Galzitskaya, OV FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence//BIOINFORMATICS, 2010, Vol.26, Is.3, pp326-332, DOI:10.1093/bioinformatics/btp691, WOS:000274342800005
    6. Lobanov, MY; Shoemaker, BA; Garbuzynskiy, SO; Fong, JH; Panchenko, AR; Galzitskaya, OV ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder//NUCLEIC ACIDS RESEARCH, 2010, Vol.38, Is., ppD283-D287, DOI:10.1093/nar/gkp963, WOS:000276399100043
    7. Dovidchenko, NV; Lobanov, MY; Garbuzynskiy, SO; Galzitskaya, OV Prediction of amino acid residues protected from hydrogen-deuterium exchange in a protein chain//BIOCHEMISTRY-MOSCOW, 2009, Vol.74, Is.8, pp888-897, DOI:10.1134/S0006297909080100, WOS:000269212600010
    8. Fong, JH; Shoemaker, BA; Garbuzynskiy, SO; Lobanov, MY; Galzitskaya, OV; Panchenko, AR Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis//PLOS COMPUTATIONAL BIOLOGY, 2009, Vol.5, Is.3, pp-e1000316, DOI:10.1371/journal.pcbi.1000316, WOS:000266214000021
    9. Garbuzynskiy, SO; Kondratova, MS Structural features of protein folding nuclei//FEBS LETTERS, 2008, Vol.582, Is.5, pp768-772, DOI:10.1016/j.febslet.2008.01.049, WOS:000257670100038
    10. Galzitskaya, OV; Reifsnyder, DC; Bogatyreva, NS; Ivankov, DN; Garbuzynskiy, SO More compact protein globules exhibit slower folding rates//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, Vol.70, Is.2, pp329-332, DOI:10.1002/prot.21619, WOS:000252208900003
    11. Finkelstein, AV; Ivankov, DN; Garbuzynskiy, SO; Galzitskaya, OV Understanding the folding rates and folding nuclei of globular proteins//CURRENT PROTEIN & PEPTIDE SCIENCE, 2007, Vol.8, Is.6, pp521-536, DOI:10.2174/138920307783018695, WOS:000251547500001
    12. Glyakina, AV; Garbuzynskiy, SO; Lobanov, MY; Galzitskaya, OV Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms//BIOINFORMATICS, 2007, Vol.23, Is.17, pp2231-2238, DOI:10.1093/bioinformatics/btm345, WOS:000249818500005
    13. Galzitskaya, OV; Garbuzynskiy, SO; Lobanov, MY Expected packing density allows prediction of both amyloidogenic and disordered regions in protein chains//JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, Vol.19, Is.28, pp-285225, DOI:10.1088/0953-8984/19/28/285225, WOS:000247929500028
    14. Savitski, MM; Kjeldsen, F; Nielsen, ML; Garbuzynskiy, SO; Galzitskaya, OV; Surin, AK; Zubarev, RA Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding//ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, Vol.46, Is.9, pp1481-1484, DOI:10.1002/anie.200603881, WOS:000244507100023
    15. Galzitskaya OV, Garbuzinskiy SA, Lobanov MY Prediction of amyloidogenic and disordered regions in protein chains // PloS Comput. Biol..- 2006.- Vol. 2, № 12.- P. 1639-1648, DOI:10.1371/journal.pcbi.0020177, WOS:000243482000015
    16. Galzitskaya, OV; Garbuzynskiy, SO; Lobanov, MY A search for amyloidogenic regions in protein chains//MOLECULAR BIOLOGY, 2006, Vol.40, Is.5, pp821-828, DOI:10.1134/S0026893306050189, WOS:000241584800018
    17. Galzitskaya, OV; Garbuzinskiy, SO Optimal relationship between average conformational entropy and average energy of interactions between residues for fast protein folding//BIOFIZIKA, 2006, Vol.51, Is.4, pp622-632, DOI:, WOS:000239589200007
    18. Garbuzynskiy, SO; Galzitskaya, OV Outlining folding nuclei in amyloidogenic proteins//FEBS JOURNAL, 2006, Vol.273, Is., pp237-238, DOI:, WOS:000238914001413
    19. Galzitskaya, OV; Garbuzynskiy, SO Entropy capacity determines protein folding//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, Vol.63, Is.1, pp144-154, DOI:10.1002/prot.20851, WOS:000236133500015
    20. Galzitskaya, OV; Garbuzynskiy, SA; Lobanov, MY Prediction of natively unfolded regions in protein chain//MOLECULAR BIOLOGY, 2006, Vol.40, Is.2, pp341-348, DOI:, WOS:000236904400016
    21. Galzitskaya, OV; Dovidchenko, NV; Lobanov, MY; Garbuzynskiy, SA Prediction of protein domain boundaries based on statistics of appearance of amino acid residues//MOLECULAR BIOLOGY, 2006, Vol.40, Is.1, pp111-121, DOI:, WOS:000235601600014
    22. Garbuzynskiy, SA; Finkelstein, AV; Galzitskaya, OV On prediction of folding nuclei in globular proteins//MOLECULAR BIOLOGY, 2005, Vol.39, Is.6, pp1032-1041, DOI:, WOS:000233881300014
    23. Garbuzynskiy, SO; Melnik, BS; Lobanov, MY; Finkelstein, AV; Galzitskaya, OV Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray and NMR-resolved protein structures?//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, Vol.60, Is.1, pp139-147, DOI:10.1002/prot.20491, WOS:000229454200015
    24. Galzitskaya, OV; Garbuzynskiy, SO; Finkelstein, AV Theoretical study of protein folding: outlining folding nuclei and estimation of protein folding rates//JOURNAL OF PHYSICS-CONDENSED MATTER, 2005, Vol.17, Is.18, ppS1539-S1551, DOI:10.1088/0953-8984/17/18/011, WOS:000229658500012
    25. Melnik, BS; Garbuzynskiy, SO; Lobanov, MY; Galzitskaya, OV The difference between protein structures obtained by X-ray analysis and nuclear magnetic resonance//MOLECULAR BIOLOGY, 2005, Vol.39, Is.1, pp113-122, DOI:10.1007/s11008-005-0016-x, WOS:000227377600016
    26. Garbuzynskiy, SO; Lobanov, MY; Galzitskaya, OV To be folded or to be unfolded?//PROTEIN SCIENCE, 2004, Vol.13, Is.11, pp2871-2877, DOI:10.1110/ps.04881304, WOS:000224762800005
    27. Garbuzynskiy, SO; Finkelstein, AV; Galzitskaya, OV Outlining folding nuclei in globular proteins//JOURNAL OF MOLECULAR BIOLOGY, 2004, Vol.336, Is.2, pp509-525, DOI:10.1016/j.jmb.2003.12.018, WOS:000188783000018
    28. Ivankov DN, Garbuzinskiy SA, Alm E, Plaxco KW, Baker D, Finkelstein AV Contact order revisited: influence of protein size on the folding rate // Protein Sci..- 2003.- Vol. 12, № 9.- P. 2057-2062., DOI:10.1110/ps.0302503, WOS:000184976100023
    29. Galzitskaya, OV; Garbuzynskiy, SO; Ivankov, DN; Finkelstein, AV Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics//PROTEINS-STRUCTURE FUNCTION AND GENETICS, 2003, Vol.51, Is.2, pp162-166, DOI:10.1002/prot.10343, WOS:000181990000002
    30. Галзитская ОВ, Довинченко НВ, Лобанов МЮ, Гарбузинский СА Предсказание границ доменов на основе статистики встречаемости аминокислотных остатков // Молекуляр. биология.- 2006.- T. 40, № 1.- C. 111-121.
    31. Лобанов М.Ю., Гарбузинский С.А., Галзитская О.В. Статистический анализ неструктурированных аминокислотных остатков в белковых структурах // Биохимия.- 2010.- T. 75, № 2.- C. 236-246.
    32. Galzitskaya OV, Garbuzinskiy SA, Lobanov MY FoldUnfold: web server for the prediction of disordered regions in protein chain // Bioinformatics.- 2006.- Vol. 22, № 23.- P. 2948-2949.
    33. Ivankov DN, Garbuzinskiy SA, Alm E, Plaxco KW, Baker D, Finkelstein AV Contact order revisited: influence of protein size on the folding rate // Protein Sci..- 2003.- Vol. 12, № 9.- P. 2057-2062.



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